http://nmrwiki.org/wiki/index.php?action=history&feed=atom&title=SHIFTX2 2026-05-18T14:15:22Z Revision history for this page on the wiki MediaWiki 1.12.0 http://nmrwiki.org/wiki/index.php?title=SHIFTX2&diff=21598&oldid=prev 2012-01-27T00:19:45Z

<p>Create post</p> <p><b>New page</b></p><div>'''author''': [http://wishartlab.com David Wishart Research Group] at the University of Alberta&lt;br&gt;<br /> '''project page:''' [http://www.shiftx2.ca SHIFTX2]&lt;br&gt;<br /> <br /> == Overview ==<br /> SHIFTX2 predicts both the backbone and side chain 1H, 13C and 15N chemical shifts for proteins using their structural (PDB) coordinates as input. SHIFTX2 combines ensemble machine learning methods with sequence alignment-based methods to calculate protein chemical shifts for backbone and side chain atoms. SHIFTX2 has been trained on a carefully selected set of 197 proteins and tested on a separate set of 61 proteins. Both the training and testing sets consisted of high resolution X-ray structures (&lt;2.1 Angs) with carefully verified chemical shifts assignments. SHIFTX2 is able to attain correlation coefficients between experimentally observed and predicted backbone chemical shifts of 0.9800 (15N), 0.9959 (13CA), 0.9992 (13CB), 0.9676 (13CO), 0.9714 (1HN), 0.9744 (1HA) and RMS errors of 1.1169, 0.4412, 0.5163, 0.5330, 0.1711, and 0.1231 ppm, respectively. <br /> <br /> <br /> ==References==<br /> 1. Beomsoo Han, Yifeng Liu, Simon Ginzinger, and David Wishart. (2011) SHIFTX2: significantly improved protein chemical shift prediction. Journal of Biomolecular NMR, Volume 50, Number 1, 43-57. <br /> [http://www.springerlink.com/content/g411k103h641244g/ doi: 10.1007/s10858-011-9478-4.]<br /> <br /> ==Links==<br /> [http://wishartlab.com Wishart Research Group]<br /> <br /> <br /> [[Category:Free software]]<br /> [[Category:Software]]</div>

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