Gcosy.c

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1 nmrPipe processing scripts
- 1.1 Example conversion scripts
  - 1.1.1 Varian
- 1.2 Example processing script

nmrPipe processing scripts

Example conversion scripts

Varian

#!/bin/csh
var2pipe -in ./fid -noaswap  \
  -xN             12000  -yN              1024  \
  -xT              6000  -yT              1024  \
  -xMODE        Complex  -yMODE          Real \
  -xSW         5999.700  -ySW         5999.700  \
  -xOBS         499.949  -yOBS         499.949  \
  -xCAR           4.725  -yCAR           4.725  \
  -xLAB              H1  -yLAB              H1  \
  -ndim               2  -aq2D          Magnitude \
  -out ./test.fid -verb -ov

The key parts are that -yN is equal to -yT, -yMODE is 'Real' and -aq2D - 'Magnitude'

Example processing script

#!/bin/csh
nmrPipe -in test.fid \
| nmrPipe  -fn SP -off 0.0 -end 1.00 -pow 1 -c 1.0    \
| nmrPipe  -fn ZF -auto                               \
| nmrPipe  -fn FT -auto                               \
| nmrPipe  -fn TP                                     \
| nmrPipe  -fn SP -off 0.0 -end 1.00 -pow 1 -c 1.0    \
| nmrPipe  -fn ZF -auto                               \
| nmrPipe  -fn FT                               \
| nmrPipe  -fn TP                                     \
| nmrPipe  -fn MC               \
   -out test.ft2 -verb 2 -ov